Struct PncaSnpCall 

pub struct PncaSnpCall {
    pub ref_pos: usize,
    pub kind: PncaCallKind,
    pub resistance_alts: BTreeMap<String, (Vec<String>, String)>,
}

Fields

ref_pos: usize

0-based position in the pncA reference sequence: the substituted base for nucleotide calls, or the first base of the codon for codon calls.

kind: PncaCallKind

resistance_alts: BTreeMap<String, (Vec<String>, String)>

Maps each resistance-conferring alt (a 1-character base string, or an amino acid 3-letter code / "*") to (drugs, WHO confidence label).

Implementations

impl PncaSnpCall

pub fn site_label(&self) -> String

HGVS-style label for this site, e.g. "c.-11A>C" or "p.Ala102Pro". When the query didn’t cover the site (query_base/query_aa is None), the alt is "?".

pub fn call_tag(&self) -> String

fn evidence(&self) -> Option<PncaEvidence>

Classifies the allele observed at this site, or None when the read doesn’t cover it at all (as opposed to covering it and finding wildtype — those are not the same thing).

Trait Implementations

impl Clone for PncaSnpCall

fn clone(&self) -> PncaSnpCall

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for PncaSnpCall

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for PncaSnpCall

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Serialize for PncaSnpCall

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.