Enum Erm41Position28 

pub enum Erm41Position28 {
    C28,
    T28,
    G28,
    A28,
    Undetermined,
}

Variants

C28

T28

G28

A28

Undetermined

Implementations

impl Erm41Position28

pub fn is_susceptible(&self) -> Option<bool>

Returns Some(true) for susceptible alleles (C28, G28, A28), Some(false) for T28 (inducible resistance), and None when the call is ambiguous or undetermined.

fn call_position28(read: &[u8]) -> Option<u8>

Returns the uppercase nucleotide byte (b'C', b'T', b'G', b'A') at erm41 position 28, located by bracketing it between ERM41_ANCHOR_L and ERM41_ANCHOR_R. Returns None if either anchor is absent or the read is too short.

fn from_base(base: Option<u8>) -> Option<Self>

Converts a raw nucleotide byte from call_position28 into the corresponding variant. Returns None for any byte that is not C, T, G, or A.

pub fn from_single_read(read: &[u8]) -> Self

Calls erm41 position 28 from a single read, trying the forward orientation first and falling back to the reverse complement. Returns Undetermined if the anchors are not found in either orientation.

Trait Implementations

impl Clone for Erm41Position28

fn clone(&self) -> Erm41Position28

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Erm41Position28

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for Erm41Position28

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Display for Erm41Position28

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for Erm41Position28

fn eq(&self, other: &Erm41Position28) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Serialize for Erm41Position28

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl Copy for Erm41Position28

impl StructuralPartialEq for Erm41Position28