Module hsp65 

Structs

KansasiiGastriSnpCall

A single diagnostic SNP position in the kansasii/gastri comparison.

MarinumUlceransSnpCall

A single diagnostic SNP position in the marinum/ulcerans comparison.

Constants

KANSASII_GASTRI_SNPS 🔒

MARINUM_ULCERANS_SNPS 🔒

Statics

HSP65_REFS 🔒

Parsed and substring-deduplicated hsp65 reference sequences, initialised once.

Functions

call_kansasii_gastri_snps 🔒

call_marinum_ulcerans_snps 🔒

identify_sequence_hsp65

Database was generated by filtering NCBI Nucleotide for Mycobacteriaceae[Organism] AND (hsp65[Gene Name] OR groEL2[Gene Name]) AND 400:3000[SLEN] AND type_material[Filter] (via fetch_myco_sequences() in build.rs).
Added to this database are the hsp65 sequences found in ntm-db (via extract_ntm_db_sequences() in build.rs).

trim_hsp65_primers

Trim hsp65 amplification primers from a sequencing read.