Module batch 

Structs

SampleSusceptibilityRecord

Per-sample susceptibility result produced by the batch AB1 directory scan.

Statics

AB1_SEQ_CACHE 🔒

In-memory cache: maps each AB1 file path to the seq_id_hits computed by the last background scan. item_from_entry() reads from this cache instead of running alignment on the UI thread.

Functions

days_to_ymd 🔒

find_sample_id 🔒

Find the first run of exactly 10 consecutive ASCII digits starting with “20” that is not embedded inside a longer digit run.

fmt_susceptible 🔒

parse_ab1_filename

Extract (sample_id, gene) from an AB1 filename.

pnca_snp_calls_str 🔒

scan_ab1_directory

Walk scan_path recursively, analyse every .ab1 file, and return a SampleSusceptibilityRecord per file sorted reverse-alphabetically by sample_id (highest first).

snp_calls_str 🔒

system_time_to_iso8601 🔒

Format a SystemTime as YYYY-MM-DDTHH:MM:SSZ without any external crate.

write_ab1_csv

Write records to a CSV file at out_path.

write_rare_mutations_csv

Write records that flag a rare resistance mutation (is_susceptible_rare == Some(false) for rrl or rrs) to out_path. Same columns as write_ab1_csv plus rrl_susceptible_rare and rrs_susceptible_rare.